
Please use the table below to find public databases related to genomics, variomics, proteomics, and chem-informatics. Each category has two levels of subcategories. Please select a category that best describes your needs.

Coding and non-coding DNA
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1
UniVec
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UniVec is a database that can be used to quickly identify segments within nucleic acid sequences which may be of vector origin (vector contamination). |
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2
VECTORdb
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Space for VectorDB was provided by the Saccharomyces Genome Database (SGD) project. VectorDB contains annotations and sequence information for many vectors commonly used in molecular biology. |
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3
UTRdb/UTRsite
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UTRsite database where more specific information on the functional motifs and cross-links to interacting regulatory protein are provided |
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4
HumHot
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Hot spot is used to indicate a locus where the recombination frequency observed exceeds the average recombination frequency between markers for the entire genome. |
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5
RRNDB
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The rrnDB is a curated database that catalogs the numbers of genes that encode for 16S, 23S and 5S ribosomal RNAs in Bacteria and Archaea. |
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6
NPRD
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Database of Genomic Islands |
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7
AREsite
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AU-rich elements in vertebrate mRNA UTR sequences |
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8
RegTransBase
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Database of regulatory interactions based on literature and an expertly curated database of transcription factor binding sites. |
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9
NGSmethDB
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Single-cytosine-resolution DNA methylation data |
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10
GISSD
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Group I intron sequence and structure Database (GISSD) is a specialized and comprehensive database for group I introns, focusing on integrating useful group I intron information from all available databases |
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11
RECODE
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RECODE -The database of the translational recoding events |
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12
GyDB
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Gypsy database of mobile genetic elements |
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13
Synthetic Gene Databas
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The Synthetic Gene Database (http://www.evolvingcode.net/codon/sgdb/index.php) is a resource that has collected together sequence information on synthetic genes (i.e. genes that were designed conceptually, rather than built from an initial, physical template). |
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14
PolymiRTS
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Polymorphism in microRNA Target Site (PolymiRTS) database is a collection of naturally occurring DNA variations in putative microRNA target sites. |
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