BioMed DBs

Please use the table below to find public databases related to genomics, variomics, proteomics, and chem-informatics. Each category has two levels of subcategories. Please select a category that best describes your needs.

- Genomics Database
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- - Coding and non-coding DNA
  - Fungal genome databases
  - Gene structure, introns and exons, splice sites
  - General genomics databases
  - General polymorphism databases
  - General sequence databases
  - Genome annotation terms, ontologies and nomenclature
  - Invertebrate genome databases
  - Prokaryotic genome databases
  - Taxonomy and identification
  - Unicellular eukaryotes genome databases
  - Viral genome databases
- Human and other Vertebrate Genomes
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- - Human ORFs
  - Model organisms, comparative genomics
  - General human genetics databases
  - Human genome databases, maps and viewers
- Human Genes and Diseases
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- - General human genetics databases
  - General polymorphism databases
  - Cancer gene databases
  - Gene-, system- or disease-specific databases
- Metabolic and Signaling Pathways
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- - Enzymes and enzyme nomenclature
  - Enzymes and enzyme
- Microarray Data and other Gene Expression Databases
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- - Microarray Data and other Gene Expression Databases
- Nucleotide sequence Database
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- - Gene structure, introns and exons, splice sites
  - Coding and non-coding DNA
  - Transcriptional regulator sites and transcription factors
  - Nucleotide sequence database
  - CodingDNA
  - Other Molecular Biology Databases
- Other Molecular Biology Databases
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- - Molecular probes and primers
- Protein sequence Database
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- - Databases of individual protein families
  - General sequence databases
- RNA
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- - RNA
- Structure Database
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- - Small molecules
  - Carbohydrates
  - Nucleic acid structure
- Organelle Databases
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- - Mitochondrial genes and proteins
- Plant Databases
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- - General plant databases
  - Arabidopsis thaliana
  - Rice
  - Other Plants
- Genomics Database
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- - Invertebrate genome databases
- Human and other Vertebrate Genomes
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- - Human genome databases, maps and viewers
- Human Gene and Diseases
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- - General human genetics databases
  - General polymorphism databases
- Nucleotide sequence Database
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- - Coding and non-coding DNA
- Metabolic and Signaling Pathways
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- - Enzymes and enzyme nomenclature
  - Metabolic pathways
  - Protein-protein interactions
  - Signalling pathways
- Protein sequence Database
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- - Databases of individual protein families
  - Protein domain databases; protein classification
  - Protein localization and targeting
  - Protein sequence motifs and active sites
- Structure Database
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- - Protein properties
  - Protein structure
- Proteomice Resources
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- - 2Dgels
- Immunological Databases
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- - Immunological Databases
- Cell Biology
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- - Cell Biology
- Metabolic and Signaling Pathways
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- - Protein-protein interactions
- Other Molecular Biology Databases
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- - Drugs and drug design
  - Molecular probes and primers
- Structure Database
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- - Small molecules


1 UniVec	UniVec is a database that can be used to quickly identify segments within nucleic acid sequences which may be of vector origin (vector contamination).	1213
2 VECTORdb	Space for VectorDB was provided by the Saccharomyces Genome Database (SGD) project. VectorDB contains annotations and sequence information for many vectors commonly used in molecular biology.	1139
3 UTRdb/UTRsite	UTRsite database where more specific information on the functional motifs and cross-links to interacting regulatory protein are provided	1045
4 HumHot	Hot spot is used to indicate a locus where the recombination frequency observed exceeds the average recombination frequency between markers for the entire genome.	1153
5 RRNDB	The rrnDB is a curated database that catalogs the numbers of genes that encode for 16S, 23S and 5S ribosomal RNAs in Bacteria and Archaea.	1149
6 NPRD	Database of Genomic Islands	1138
7 AREsite	AU-rich elements in vertebrate mRNA UTR sequences	1123
8 NGSmethDB	Single-cytosine-resolution DNA methylation data	1115
9 RegTransBase	Database of regulatory interactions based on literature and an expertly curated database of transcription factor binding sites.	1113
10 GISSD	Group I intron sequence and structure Database (GISSD) is a specialized and comprehensive database for group I introns, focusing on integrating useful group I intron information from all available databases	1104
11 RECODE	RECODE -The database of the translational recoding events	1098
12 GyDB	Gypsy database of mobile genetic elements	1089
13 Synthetic Gene Databas	The Synthetic Gene Database (http://www.evolvingcode.net/codon/sgdb/index.php) is a resource that has collected together sequence information on synthetic genes (i.e. genes that were designed conceptually, rather than built from an initial, physical template).	1082
14 PolymiRTS	Polymorphism in microRNA Target Site (PolymiRTS) database is a collection of naturally occurring DNA variations in putative microRNA target sites.	1045